Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5099910/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  206,166,983
 Normal Paired: 180,566,623 (87.58%)
 Chimeric Paired: 22,404,580 (10.87%)
 Chimeric Ambiguous: 2,701,668 (1.31%)
 Unmapped: 494,112 (0.24%)
 Ligation Motif Present: 32,329 (0.02%)
Alignable (Normal+Chimeric Paired): 202,971,203 (98.45%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-31T17:22:07,137]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 57,106,489 (27.70%)
PCR Duplicates: 145,864,714 (70.75%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 58,997,605
Intra-fragment Reads: 29,961,025 (14.53% / 52.47%)
Below MAPQ Threshold: 4,213,162 (2.04% / 7.38%)
Hi-C Contacts: 22,932,302 (11.12% / 40.16%)
 Ligation Motif Present: 11,383  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 28% - 25% - 25% - 22%
Inter-chromosomal: 3,837,389  (1.86% / 6.72%)
Intra-chromosomal: 19,094,913  (9.26% / 33.44%)
Short Range (<20Kb): 11,147,779  (5.41% / 19.52%)
Long Range (>20Kb): 7,947,126  (3.85% / 13.92%)